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Pest Management Science

Wiley

Preprints posted in the last 30 days, ranked by how well they match Pest Management Science's content profile, based on 32 papers previously published here. The average preprint has a 0.05% match score for this journal, so anything above that is already an above-average fit.

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Unlocking the <Alphitobius diaperinus> (Coleoptera: Tenebrionidae)-Combatting Capabilities of <Bacillus thuringiensis> INTA Mo4-4 through genomic and phenotypic characterization

Perez, M. P.; Palma, L.; Berretta, M. F.; Benintende, G. B.; Sauka, D. H.

2026-05-13 microbiology 10.64898/2026.05.13.724709 medRxiv
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Bacillus thuringiensis INTA Mo4-4 was characterized phenotypically, genomically, and for insecticidal activity against Alphitobius diaperinus. Microscopy revealed rare flat rectangular parasporal crystals, and SDS-PAGE identified a ca. 67 kDa protein, similar to B. thuringiensis serovar morrisoni strain tenebrionis DSM-2803, which was proteolytically processed to a ca. 55 kDa fragment. Genomic analysis showed a 5.99 Mb genome with 99.43% completeness, clustering phylogenetically with B. cereus and B. thuringiensis. High genomic similarity was observed with B. thuringiensis svar. morrisoni BGSC 4AA1, confirmed by MLST analysis assigning it to ST-23. The genome encodes an interesting arsenal of pesticidal proteins showing significant similarity to Cry3Aa, Mpp23Aa, Xpp37Aa, Mpp5Ab, Vpb1Ad, Vpb1Ae, Vpa2Ab, Vpa2Ba, Vpa2Bb and Spp1Aa, with demonstrated toxicity against coleopteran pests. Biosynthetic gene clusters for toyoncin, fengycin, and bacillibactin were identified. Dose-response bioassays showed that INTA Mo4-4 was nearly four times more toxic to A. diaperinus larvae (LC50 136.9 {micro}g/ml) than DSM-2803 (LC50 540.5 {micro}g/ml), with the difference being statistically significant. No teratological effects were observed on Musca domestica. These findings suggest that INTA Mo4-4 is a promising candidate for the biological control of A. diaperinus.

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Potential of Bacillus subtilis as a biological control agent against three rot-causing pathogens in seed yams

Darko, G.; Agbetiameh, D.; Tetteh, G.; Acheampong, K.; Sarkodie, A. S.; Aidoo, A. K.

2026-05-07 plant biology 10.64898/2026.05.05.722924 medRxiv
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Ghana is the largest exporter of yams in West Africa. However, yam production, particularly seed yam production, is constrained by storage rot during the off-season. Farmers seldom use synthetic pesticides to control seed yam rot. However, these are costly and pose adverse health risks to farmers. Biological antagonists offer a sustainable, relatively cost-effective, and safe alternative to synthetic pesticides. Therefore, this study aimed to test the efficacy of Bacillus subtilis as an alternative to synthetic pesticides. Bacillus subtilis supplied through the biofungicide Serenade ASO (Bayer) was assayed against three storage-rot pathogens: Lasiodiplodia theobromae, Aspergillus niger, and Rhizopus sp. These pathogens were previously isolated from the tissues of rotten seed yams. The efficacy of the bacterium was tested at concentrations of 17 %, 33 %, and 50 % in both in vitro and in vivo bioassays. B. subtilis (50 %) completely inhibited the growth (100 %) of L. theobromae in the in vitro studies. In contrast, there was little to no growth inhibition of the other two test fungi. In the in vivo assay, B. subtilis (50%) significantly (P < 0.01) inhibited L. theobromae, resulting in minimal rot lesions. However, B. subtilis (50 %) was ineffective against the other two test pathogens, resulting in large rot lesions on the seed yams. This suggests that B. subtilis could be an ideal alternative to synthetic pesticides for controlling L. theobromae on seed yams.

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Method for maintaining translocated wild roses under laboratory conditions for controlled gall induction by Diplolepis rosae and D. mayri

Laszlo, Z.; Denes, A. L.; Witiak, S. M.; Peterfi, E.; Podar, D.

2026-05-21 ecology 10.64898/2026.05.19.726150 medRxiv
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Plant-gall wasp systems provide unique models for studying multitrophic interactions and unique developmental trajectories, yet standardized laboratory protocols for maintaining wild rose hosts (Rosa spp.) and sustaining gall inducers (Diplolepis spp.) are lacking. We developed and tested a method for growing and maintaining translocated individuals of Rosa canina, R. rubiginosa, R. spinosissima, R. gallica, R. tomentosa, and R. pendulina under laboratory conditions over three consecutive years (2023-2026). The goal was to have a constant supply of plant host material for reliably producing galls of D. rosae and D. mayri for experimental use. The protocol integrates soil and substrate composition, photoperiod and humidity regimes, pruning, dormancy management, and controlled exposure to gall-inducing wasps. More than 75% of rose individuals survived the full 3-year period, with consistent annual gall induction across some of the species. This work represents the first reproducible laboratory method for long-term maintenance of wild rose hosts and controlled gall induction by Diplolepis species, while also providing a transferable framework for maintaining perennial woody hosts and experimentally manipulating specialized plant-insect interactions under laboratory conditions, thereby providing a platform for ecological, physiological, and evolutionary studies on these interactions.

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Soda-baited RNAi Yeast Insecticides as Effective Attractive Targeted Sugar Baits (ATSBs) for Mosquito Control

Stewart, A. T. M.; Hamid-Adiamoh, M.; Sun, L.; Njoroge, T. M.; Winter-Reece, N.; Feng, R. S.; Singh, S.; James, L. D.; Sofhauser, B.; Dille, C.; Mohammed, A.; Severson, D. W.; Duman-Scheel, M.

2026-05-05 genetics 10.64898/2026.05.01.722182 medRxiv
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BackgroundAttractive Targeted Sugar Baits (ATSBs) are a promising, environmentally friendly approach for mosquito control, but the direct field application, scalability and long-term effectiveness of ATSBs across diverse mosquito species remain significant challenges. Methodology/Principal FindingsWe assessed the efficacy of a genetically engineered RNA interference (RNAi) yeast strain (Sh.463_56.10R) formulated in three sugar baits, soda (Coca-ColaTM), 10% sucrose, and a commercial mosquito bait (BaitStabTM), on Aedes, Anopheles and Culex mosquitoes. All RNAi yeast bait formulations induced significantly higher mean mortality (87-100%) compared to the control groups (0-9%; P<0.0001), but mosquitoes exhibited a higher feeding preference for RNAi yeast-soda baits, which induced mortality rates of 94-100% (P < 0.0001) recorded across all mosquito species. Additionally, to assess the competitiveness of the RNAi yeast-soda bait to other tropical sugar sources, semi-field choice assays were conducted in Trinidad, West Indies using competing flowering plants and fruits typically found in residential environments. The RNAi yeast-soda ATSB continued to perform well in the presence of competing floral and fruit sugar sources during both Aedes albopictus and Culex quiquefasciatus trials, though the presence of several fruits and flowers did reduce A. aegypti mortality, suggesting that further field testing will be necessary. The residual activity of the Sh.463_56.10R + soda formulation was retained for at least 14 months, with sustained 100% mortality in C. quinquefasciatus and 93-100% mortality in Aedes aegypti, Anopheles gambiae and Anopheles stephensi. The RNAi yeast-soda ATSB also performed well in semi-field studies performed with a prototype soda bottle feeder. Conclusions/SignificanceThis study demonstrates the potential of soda-baited RNAi yeast as a potent, long-lasting, and scalable platform for ATSB-based mosquito control as a component of integrated vector management programs. Author SummaryMosquito-borne diseases continue to affect millions of people worldwide, and current mosquito control methods face challenges such as low public uptake, insecticide resistance and environmental concerns. Here we evaluated a new and environmentally friendly approach to mosquito control using ATSBs. We tested genetically engineered species-specific yeast producing RNAi molecules capable of killing mosquitoes that feed on it. We mixed the yeast with three different sugar baits, including soda (Coca-ColaTM), 10% sucrose, and the commercial mosquito bait BaitStabTM formulation, and evaluated how well they worked against different mosquitoes. The results showed that the RNAi yeast mixed with soda was the most effective, killing up to 100% of mosquitoes in laboratory and outdoor tests. The bait remained effective in the presence of many competing natural tropical fruit and floral sugar sources. Remarkably, the bait, which can be delivered in a soda bottle feeder, stayed active for at least 14 months under simulated field conditions. These findings suggest that soda-based RNAi yeast baits could provide a practical, long-lasting and scalable tool for mosquito control and may help strengthen future strategies to reduce mosquito-borne diseases.

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Compatibility and Multi-Season Field Evaluation of Trichoderma koningiopsis Integrated with Fungicides for Soybean Charcoal Rot Management

Bleckwedel, J.; Nieva, R. E.; Gonzalez, V.; Ploper, L. D.; Reznikov, S.

2026-05-13 plant biology 10.64898/2026.05.11.724353 medRxiv
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Soybean (Glycine max [L.] Merr.) productivity is frequently compromised by soil-borne pathogens. Macrophomina phaseolina (Mp), the causal agent of charcoal rot, can produce important soybean yield losses especially when hot and dry weather prevails. Integrating biological control agents with chemical seed treatments represents a promising strategy for improving disease management. This study aimed to (i) assess the in vitro compatibility of Trichoderma koningiopsis with commercial fungicide seed treatments, and (ii) evaluate the field performance of T. koningiopsis, alone or combined with compatible fungicides, across three soybean growing seasons. Compatibility assays revealed fungicide-specific effects, with Acronis(R) classified as non-fungitoxic and Topseed Extra as moderately fungitoxic. Across field seasons, Mp inoculation reduced seedling emergence, while several seed treatments improved emergence compared to the inoculated control, however, treatment effects varied markedly among years. Disease severity did not differ significantly among treatments in any season, and yield responses were strongly modified by environmental conditions rather than treatment effects. Temperature-response assays showed that T. koningiopsis exhibited optimal growth between 28 to 30{degrees}C and complete inhibition above 40{degrees}C, indicating high thermal sensitivity. The results demonstrate that T. koningiopsis can be integrated with compatible fungicides and may enhance early stand establishment under favorable conditions, but its field performance is strongly limited by high temperatures. These findings highlight the importance of environmental conditions when biological seed treatments are used.

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Evaluating β-glucanases as cell wall-permeabilising agents against Phytophthora agathidicida oospores

Pierson, E.; Mainwaring, J. C.; Patrick, W. M.; Gerth, M. L.

2026-05-12 biochemistry 10.64898/2026.05.08.723360 medRxiv
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The persistence of specialised survival spores produced by microbial pathogens represents a primary bottleneck in the management of plant diseases. In oomycetes, these spores (known as oospores) are largely impervious to chemical control, allowing them to persist in soil and initiate new infection cycles over many years. A prominent example is the soil-borne pathogen Phytophthora agathidicida, the causal agent of kauri dieback disease, where long-lived oospores hinder conservation efforts in native forests. The resilience of oospores is attributed to their thick wall composed of complex {beta}-glucan layers that render the oospores impermeable to most conventional biocides. Here we have investigated an enzyme-based approach for weakening the oospore cell wall. We searched enzyme databases to select {beta}-glucanases targeting a variety of linkages found in Phytophthora oospore walls. Eight of these {beta}-glucanases were successfully purified and tested for their digestive activity against intact oospores in vitro using a phenol-sulfuric acid assay. We showed that combining these enzymes was crucial to achieve significant digestion through synergies and additive effects. The optimal combination, comprising 1,3-, 1,6-, and 1,3(4)-{beta}-glucanases, was evaluated for its ability to permeabilise oospores to five biocides typically effective only on other, more sensitive lifecycle stages of the pathogen. Using a live/dead fluorescence assay, we observed that the effects of the membrane-targeting biocides were potentiated in oospores that were pre-treated with the {beta}-glucanase mixture. Our results highlight enzymatic cell wall permeabilisation as a promising strategy toward improved management of oospore persistence in kauri forest soils and against broader oomycete threats. KeypointsO_LIOur phenol-sulfuric acid assay can be used to screen for oospore-degrading enzymes. C_LIO_LISynergistic enzyme combinations are essential for effective oospore wall digestion. C_LIO_LIEnzyme pre-treatment sensitises oospores to membrane-targeting biocides. C_LI

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Phytorisque: an Integrated Assessment Tool for Evaluating the Environmental Risk of Pesticides

Monseur, L.; de Maere, J.-B.; Guillitte, C.; Nihorimbere, G.; Janssens, L.; Bragard, C.

2026-05-04 ecology 10.64898/2026.04.30.721842 medRxiv
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IntroductionThe environmental impacts of pesticides have raised increasing concern, prompting the development of indicators to assess associated risks across ecosystems. Two main categories are generally distinguished: score-based indicators, which aggregate variables into scores, and risk-based indicators, grounded in the definition of risk as the product of hazard and exposure. Although more data-intensive and more complex to implement, risk-based indicators are recognized to better preserve proportionality with actual risk levels. ObjectivesThis study presents Phytorisque, a model based on the exposure-toxicity ratio to monitor risks associated with pesticide use in Walloon agriculture, from farm to regional scales, and to identify the most contributing active substances in support of risk-reduction policies MethodPhytorisque is a hybrid model that combines mechanistic, empirical, and statistical approaches, integrating quantities of active substances, their ecotoxicological characteristics, and their mobility, persistence, and bioaccumulation properties to generate indices specific to different environmental compartments. ResultsThe indices obtained enable comparison across substances, agricultural sectors, years, and management scenarios. The Phytorisque model provides an integrated assessment of risk across environmental compartments. It can monitor risk evolution over the years for policy impacts evaluation, diagnose the most problematic substances and prospect environmental risks associated with the use of chemical phytoproducts. ConclusionsPhytorisque provides an integrated risk assessment approach adapted to temporal monitoring, diagnosis, and forecasting. It is a relevant operational tool for supporting regional strategies aimed at reducing pesticide-related risks. The model is also transferable to other regions through the adaptation of parameters to local conditions and context.

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Insect pests survey of Prosopis juliflora, Afar rangeland, Ethiopia

Mekonnen, B. B.; Ali, S. E.; Lemma, E. G.

2026-05-05 ecology 10.64898/2026.05.04.722396 medRxiv
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Prosopis juliflora is an invasive alien plant species and a problematic weed that poses significant ecological and socio-economic challenges in Ethiopia, particularly in the Afar rangelands. The study explored the diversity and effects of insect herbivores communities feeding on the flowers and pods of P. juliflora to determine their role in limiting reproductive success across three selected ecological sites: Amibara, Gewanne, and Aysayita. A total of 118 adult insect specimens were collected between January and November 2021 using a sweep net and hand collection methods. Community structure, analysis via the Shannon Wiener diversity index, strongly influenced damage pattern. Amibara exhibited the highest insect diversity resulting in significant reproductive damage, including 5.98% of flower loss and 10.39% pods tunneling, primarily caused by Chrysomelidae and Pyralidae. Conversely, Gewanne was showed lower diversity, but higher sap-sucking (13.39 % shriveled pods; 5.11 % flower curling) were caused by Aphididae. Overall, 18.41 % of the pods, and 11.59 % of the flowers were exhibited insect related injury. These finding confirm that more internal seed predation and nutrient depletion were revealed significantly reduce viable seed production. The result was suggested that natural insect communities currently function as partial biological control agents. This indicates strong potential for developing integrated biological control strategies to manage P. juliflora invasion in Ethiopia rangelands.

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Comprehensive Evaluation of Mosquito Repellent Products: Efficacy, Safety, and Public Health Implications

Mostafa, T.; Mogumdar, B.; Wang, S.; Yuan, Z.; shafoyat, u.; Cheng, G.

2026-05-10 toxicology 10.64898/2026.05.07.26352623 medRxiv
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Mosquito-borne diseases such as dengue, chikungunya, and malaria remain major public health challenges in South Asia, particularly in Bangladesh, where mosquito repellents are widely used as primary preventive tools. This study presents a comparative evaluation of commonly used repellent products, including mosquito coils, liquid vaporizers and aerosols, DEET-based creams, and natural formulations, focusing on their efficacy, protection duration, and potential health risks. Efficacy was assessed using controlled laboratory methods, including chamber-based exposure and arm-in-cage tests against Aedes aegypti (Barnard & Xue, n.d.). Safety was evaluated through in vivo toxicological analysis in a rat model, incorporating clinical observations, hematological and biochemical profiling, and histopathological examination. The results indicated an overall mean effectiveness of 85%, with DEET-based creams demonstrating the highest efficacy (95%), while natural repellents showed the lowest (70%). Mosquito coils provided the longest protection duration ([~]10 hours) but were associated with the highest health risk due to combustion-related emissions. Vaporizers and aerosols offered moderate efficacy with moderate health risk. Toxicological findings revealed that coil exposure induced significant respiratory stress, elevated liver enzymes (ALT, AST), increased leukocyte count, and notable lung tissue damage. Vaporizer and aerosol exposure resulted in mild physiological changes, whereas DEET-based and natural repellents showed minimal systemic toxicity. Overall, the study highlights a clear trade-off between efficacy and safety across repellent types. These findings emphasize the need for informed product selection, stronger regulatory control, and the development of safer, cost-effective, and sustainable mosquito repellent technologies for effective vector control in endemic regions.

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Glycosylation-dependent Turnover of Triterpenoid Saponins Controls Insect Deterrence

Shen, J.; Cardenas, P. D.; Bak, S.

2026-05-07 biochemistry 10.64898/2026.05.04.721528 medRxiv
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Background and AimsPlants deploy triterpenoid saponins as chemical defences against herbivores, yet it remains unclear whether insect digestion detoxifies these compounds or generates equally or more active metabolites. Because saponin bioactivity depends strongly on glycosylation patterns, we examined the fate and defensive activity of hederagenin-derived saponins during herbivory. MethodsLarvae of Plutella xylostella were fed leaf discs containing structurally defined hederagenin-derived saponins. Saponin composition in treated leaves and larval frass was analysed by LC- qTOF-ESI-MS/MS. Feeding assays were used to compare the antifeedant activity of mono- and bidesmosidic forms. Key ResultsLarvae selectively metabolized complex hederagenin-derived saponins into simpler forms, with cellobiosides converted into monoglucosides during digestion, resulting in a marked shift in saponin composition between ingested material and frass. Feeding assays showed that monodesmosidic saponins strongly deterrer feeding, whereas bidesmosidic saponins were largely inactive. The loss of activity in bidesmosidic saponins was not explained by differential metabolism, indicating that glycosylation patterns directly determine biological function. ConclusionsInsect herbivores selectively modify saponin structures through deglycosylation, thereby altering their defensive properties. Our findings demonstrate that glycosylation governs both saponin activity and metabolic fate, highlighting insect-driven turnover as a critical component of plant chemical defence during plant-herbivore interactions. Issue SectionOriginal article

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Multiple Pesticides and their Mixtures Tested for Genotoxicity in the Micronucleus Assays on Intestinal Caco-2 Cells

Truzzi, F.; Tibaldi, E.; Noferini, R.; Sgargi, D.; Panzacchi, S.; Nardali, G.; Lorenzini, A.; Dilloo, S.; D'Amen, E.; Gnudi, F.; Dinelli, G.; Scheepers, P. T. J.; Mandrioli, D.

2026-05-19 pharmacology and toxicology 10.64898/2026.05.16.725095 medRxiv
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Widespread exposure to multiple pesticides might potentially represent a genotoxic risk to humans. However the effects of these mixtures are largely unknown. Genotoxicity is a key characteristic of carcinogens, and its assessment represents an important component of the overall safety assessment of pesticides. In the present study, in vitro micronucleus test on intestinal Caco-2 human cells was performed according to OECD TG 487 in order to ascertain the genotoxicity of ten commonly used pesticides (dose range 0-100 mg L-1), tested as individual pesticides or mixtures. Significant dose-related increases in micronuclei were observed for exposures to lambda-cyhalothrin, tebuconazole, glyphosate, deltamethrin, fluopyram and the synergist piperonyl butoxide. Significant increases of micronuclei were also observed at different doses for cypermethrin, acetamiprid and cyprodinil, however these increases were not dose-dependent. Imazalil genotoxicity could not be analyzed due to confounding of high cytotoxicity even at low doses. Results show that the co-formulant piperonyl butoxide was genotoxic to human cell lines at all tested doses. Moreover, glyphosate, acetamiprid and fluopyram showed genotoxic effects at concentrations of 0.01-1.0 mg L-1. Although previously reported to be not genotoxic cyprodinil and deltamethrin were observed to be genotoxic to Caco-2 cells. A combination of 3 prioritzided pesticides (acetamiprid, glyphosate, tebuconazole) showed genotoxic effects even at the lowest dose. A combination of 8 prioritized pesticides showed genotoxicity at the highest dose. No synergistic interactions in micronuclei formation were evident in either the mixture of 3 or 8 prioritized pesticides. This study provides important information on the genotoxicity of different widely used pesticides and confirms the validity of a component-based approach in genotoxicity assessment of pesticide mixtures. This study was performed as part of the EU SPRINT (Sustainable Plant Protection Transition: A Global Health Approach) project.

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The impact of Cronartium ribicola inoculum density on quantitative disease resistance in whitebark pine.

Johnson, J. S.; Wilhite, B.; Kegley, A.; Danchok, R.; Sniezko, R. A.

2026-05-06 genetics 10.64898/2026.05.02.722345 medRxiv
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Whitebark pine (Pinus albicaulis), a wide-ranging high-elevation conifer in western North America, is listed as threatened in the U.S. and as endangered in Canada. A major threat to whitebark pine is the non-native, invasive white pine blister rust disease, caused by the fungal pathogen Cronartium ribicola. In many pathosystems (including white pine blister rust), seedling inoculation trials are used to identify parent trees with genetic resistance. However, many of these trials use only one spore density for inoculation, and little information exists on the effectiveness of quantitative disease resistance (QDR) under varying spore densities and the corresponding implications for field performance. In this study, we examine the levels of infection and survival present within six whitebark pine seedling families previously rated for QDR (three susceptible and three resistant families) under six widely varying inoculum densities. The susceptible families showed very high infection and mortality at all inoculum densities, while performance of the resistant families varied with spore density treatment. The information gathered from the study will be useful in updating the projections of the future of whitebark pine populations under field conditions in areas of different rust hazard. The results also serve as a caution to those working in other pathosystems where seedling inoculation trials based on one spore density level are used to rate the resistance level of parent trees and their associated progeny.

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Two Pellioditis biocontrol nematode species infect Ariolimax columbianus, the Pacific banana slug, and increase mortality in laboratory infectivity trials

Taylor, E. R.; Kulkarni, I.; Howe, D. K.; Richart, C. H.; Mc Donnell, R. J.; Denver, D.

2026-05-18 zoology 10.64898/2026.05.14.725190 medRxiv
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Gastropods are a highly diverse and often overlooked taxonomic group of significant ecological and economic importance. Some terrestrial gastropods are critical pests of commercial agriculture and home gardens worldwide. Malacopathogenic nematodes offer an effective biological control method of managing pest slugs and snails as a natural enemy. Pellioditis (syn. Phasmarhabditis) hermaphrodita and Pellioditis (syn. Phasmarhabditis) californica are two species of biocontrol nematodes that have been commercialized, sold as Nemaslug(R) and Nemaslug(R) 2.0 respectively on three continents. Although there is interest in bringing Nemaslug(R) products to the US, they are currently not permitted due to limited knowledge on their North American distribution and effects on non-target and native species. In this study, we investigated the impact of P. hermaphrodita and P. californica on Ariolimax columbianus across two slug-host life stages, in laboratory infectivity assays. The objectives were to 1. determine whether P. hermaphrodita and P. californica nematodes impact survival of A. columbianus, and 2. evaluate whether there are differential effects on survival in juvenile and adult life stages of A. columbianus, in laboratory infectivity trials. We found that P. hermaphrodita caused significant mortality in A. columbianus with 100% mortality observed in both juvenile and adult slug hosts. The P. californica treatment had significant effects on the juvenile A. columbianus group only, with 80% mortality. By contrast, only 16% of unexposed control juveniles and 4% of control adult slugs died during the experiment. These results indicate that P. hermaphrodita and P. californica are lethal to the native, non-target Pacific banana slug (A. columbianus) under laboratory conditions, with mortality differing between juvenile and adult host life stages. Given the ecological importance of A. columbianus, these findings raise concerns for potential non-target effects of P. californica and P. hermaphrodita on terrestrial gastropod communities and emphasize the need for testing biocontrol agents against multiple life stages.

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Danish profile of soft rot Pectobacteriaceae; A three-year field sampling study proving several clonal clades of soft rot isolates across diverse locations implicating a common origin

Pedersen, J. S.; Junco, L. M. F.; Streubel, A.; Jensen, B.; Kot, W.; Roy, C.; Carstens, A. B.; Hansen, L. H.; Hille, F.; Franz, C. M. A. P.; Rothgardt, M. M.; Nielsen, T. K.

2026-05-15 microbiology 10.64898/2026.05.11.724364 medRxiv
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Soft rot Pectobacteriaceae (SRP) are among the most economically important plant pathogenic bacteria and are especially known to be problematic in potato production. The epidemiology of disease transmission has been investigated for almost a century, and several aspects have been highlighted as plausible infection routes. However, it is generally accepted that the major source of disease is the latently infected mother tuber, but several parameters are still influencing disease prevalence including contaminated equipment, soil water status as well as temperature. Management of the disease is limited to hygiene practices, dry storage and seed certification systems but several studies have also proven biocontrol agents such as bacteriophages (phages) as promising tools. Despite the severity of SRP on potato production, little is known about the genetic diversity of SRPs in Denmark, and since only few isolates are available, the possibility to design a broadly effective phage cocktail is limited. Here we describe a three-year field study utilizing an agri-citizen science approach where Danish farmers provided symptomatic potato plants or tubers, together with metadata such as date, location, potato variety and origin. By using whole genome sequencing (Illumina and Nanopore) together with metadata we were able to investigate and monitor the epidemiological disease spread across the country using 103 complete genomes, sampled across all three years. In this study we provide epidemiological evidence of disease origins and a suite of phages that could be used as a biocontrol tool for early disease intervention. Our results revealed several clonal clades across diverse locations (SNPs < 20) which strongly indicate common origin. A total of 17 Pectobacterium phages were tested and did target > 80% of clonal clades. Based on the clonality across the soft rot isolates we propose the possibility to set in early on using phages targeting strains relevant for soft rot development, with the possibility of a surveillance program together with customizing the phage preference.

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Putative Herbicolin A, an antifungal lipopeptide produced by Pantoea agglomerans APC 4211 is a promising biocontrol agent against food spoilage fungi

Kamilari, E.; O'Connor, P.; Reen, F. J.; Das, P.; Aiswariya Deliephan, A.; Hill, D.; Fursenko, O.; Wiese, J.; Moore, A. S. N.; Hill, C.; Stanton, C.; Ross, R. P.

2026-05-21 microbiology 10.64898/2026.05.21.726617 medRxiv
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Fungal contamination of food with yeast and moulds is associated with major economic losses due to spoilage and also poses health risks in the form of mycotoxin production. The strain Pantoea agglomerans APC 4211 isolated from leaves of Ilex aquifolium (holly tree) has broad spectrum antifungal activity against a variety of food spoilage fungi. Genomic analysis of the strain confirmed the presence of biosynthetic gene clusters potentially encoding for the enzymatic machinery required for the production of the antifungal lipopeptide herbicolin A. Matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) analysis of the cell-free supernatant (CFS) confirmed the presence of molecular masses corresponding to herbicolin A (1300.8 Da), and herbicolin B (1138 Da). Purified herbicolin A has desirable properties for biotechnological applications, including potent antifungal activity against a range of spoilage fungi, thermal stability and resistance to proteases. Herbicolin A has low cytotoxicity against epithelial cell lines and has minimum inhibitory concentrations (MICs) lower than those of some commercial antifungal drugs (0.2 - 2.5 {micro}g/ml). In a model dairy system (10% skim milk), herbicolin A demonstrated excellent solubility and stability, effectively eliminating Aspergillus niger and Penicillium notatum at a concentration of 5 {micro}g/mL. In conclusion, herbicolin A is a potent, naturally occurring antifungal agent with the potential to be applied as a biopreservative in food systems, providing a safe, clean-label, and efficient compound for synthetic preservatives replacement. HighlightsO_LIHerbicolin A has a strong potential as a natural preservative for food protection C_LIO_LIHerbicolin A shows lower MICs than several antifungal agents C_LIO_LIHerbicolin A is stable under heat and resistant to proteolytic degradation C_LIO_LIHerbicolin A has strong solubility and stability in a model dairy system C_LIO_LIHerbicolin A indicates low cytotoxicity against epithelial cell lines C_LI Data summaryThe authors confirm all supporting data, code and protocols have been provided within the article or through supplementary data files.

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Revisiting the diversity of secondary endosymbionts in the major pest oat aphid, Rhopalosiphum padi

Yang, Q.; Zhu, B.; Yu, W.; Zhao, Z.; Gill, A.; Kaur, J.; Jonge, N. d.; Luan, J.-B.; Kristensen, T.; Liang, P.; Hoffmann, A. A.

2026-05-21 microbiology 10.64898/2026.05.19.726398 medRxiv
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There is disagreement on whether secondary endosymbionts are found in the major cereal pest aphid, Rhopalosiphum padi. Some papers report a diversity of secondary bacterial endosymbionts while others have failed to find evidence of these bacteria in this species. Here we revisit this issue by summarizing the relevant literature and through additional sampling of the species in Australia, China and Denmark using a combination of molecular approaches. We find a general absence of secondary endosymbionts beyond the obligate endosymbiont Hamiltonella defensa in R. padi. While the inconsistency in survey results may reflect rapid changes in endosymbiont turnover in populations and/or the impact of ecological factors such as host plant type on endosymbiont diversity, we are concerned that technical issues may be at least partly responsible for inconsistencies in the literature. This leads us to emphasize the importance of multiple sources of evidence required to establish and characterize endosymbiont infections, including PCR and qPCR assays, DNA Sanger sequencing and 16SrRNA gene metabarcoding. We note that several major aphid pests show a low incidence of secondary endosymbionts which raises issues about the importance of these endosymbionts in aphids that constitute pests, even though endosymbionts can in some cases increase host fitness and therefore pest impact.

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Mapping of Stripe Rust and Leaf Rust Resistance Genes in the Hard Red Winter Wheat Population Green Hammer/Lonerider

Sharma, R.; Wang, M.; Chen, X.; Carver, B. F.; Guttieri, M.; St. Amand, P.; Bernardo, A.; Bai, G.; Liu, S.; Ara, A. M.; Aoun, M.

2026-05-15 genetics 10.64898/2026.05.13.724876 medRxiv
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Stripe rust and leaf rust, caused by Puccinia striiformis f. sp. tritici and P. triticina, respectively, are the most destructive wheat diseases in the southern Great Plains. Green Hammer is a hard red winter wheat (HRWW) cultivar released by Oklahoma State University in 2018 and has demonstrated a stable adult plant resistance to stripe rust and race-specific seedling resistance to leaf rust. To identify and map rust resistance loci, 109 doubled haploid (DH) lines derived from the cross between Green Hammer and another HRWW cultivar, Lonerider, were developed. Lonerider showed adult plant resistance to stripe rust but was susceptible to multiple P. triticina races. The DH lines were evaluated for stripe rust at the adult plant stage in greenhouse and field environments across Oklahoma, Kansas, and Washington, and for leaf rust at the seedling stage against seven U.S. P. triticina races and at the adult plant stage in Oklahoma and Texas. Genotyping-by-sequencing generated 6,078 polymorphic single-nucleotide polymorphisms used for genetic mapping. Quantitative trait loci (QTL) analysis identified 14 stripe rust and 8 leaf rust resistance QTL. For stripe rust, a major QTL in Green Hammer, QYr.osughln-2AS, was identified in the proximity of the 2NvS translocation. Three other major stripe rust resistance QTL were identified in Lonerider on chromosomes 2AL (two QTL) and 2BS (one QTL). For leaf rust, QLr.osughln-1DS and QLr.osughln-2DS.1 were the two major QTL identified in Green Hammer and most likely correspond to the all-stage resistance genes Lr21 and Lr39, respectively. In this study, we identified previously characterized genes as well as unknown genes that can be utilized in wheat breeding programs to enhance resistance to leaf rust and stripe rust.

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Direct and Indirect Entomological Efficacy of Targeted Indoor Residual Spraying against Aedes aegypti in Iquitos, Peru

Astete, H.; Vasquez, G. M.; Lopez, V.; Zambrano, B.; Reyna, B.; Moore, R. C.; Morrison, A. C.; Vazquez-Prokopec, G. M.; Larson, R. T.

2026-05-18 ecology 10.64898/2026.05.18.725931 medRxiv
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BackgroundControl of Aedes aegypti, the primary vector of dengue and other Aedes-borne viruses, is challenged by insecticide resistance, limited efficacy of existing tools and the large and widespread epidemics. Targeted Indoor Residual Spraying (TIRS), a modification of traditional indoor residual spraying focused on Ae. aegypti resting sites, has demonstrated promising results, yet its indirect community-wide effects remain underexplored. Methodology/Principal FindingsWe conducted an entomological cluster-randomized controlled trial in Iquitos, Peru, to evaluate the direct and indirect entomological impacts of TIRS using pirimiphos-methyl. Thirty clusters were randomized to receive either TIRS (15 clusters, 898 structures) or standard Ministry of Health vector control activities (15 clusters, 1,018 structures). Aedes aegypti indoor densities were assessed in the 45 days pre-intervention and at four time points up to 255 days post-intervention using Prokopack aspiration. Generalized linear mixed models with a negative binomial link were used to estimate incidence rate ratios (IRRs) and calculate efficacy (1-IRR) for houses that received TIRS (direct effect) and untreated houses in TIRS clusters (indirect effect). Direct efficacy reached 96% at 15 days post-spraying and remained significant (40%) at 255 days post-spraying. Indirect efficacy reached 69% at 15 days and declined to 7% by 255 days post-spraying. Despite only 57% household-level TIRS coverage, both direct and indirect impacts on Ae. aegypti were significant during early post-intervention surveys, and after 8 months in TIRS clusters. Conclusions/SignificanceTIRS provided substantial and sustained reductions in indoor Ae. aegypti density, including measurable indirect effects in untreated homes within intervention clusters. These findings demonstrate the entomological value of TIRS even at moderate coverage levels and highlight its potential for both preventive and reactive vector control programs and should be considered for implementation by Ministries of Health in dengue-endemic urban settings as well as by the U.S. military when deployed to tropical or subtropical locations.

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First occurrence of Corynespora cassiicola infecting chia plant in Bangladesh and its sensitivity to selected fungicides

Badhon, A. K.; Gupta, D. R.; Paul, S. K.; Ali, J.; Rahman, M. M.; Islam, T.

2026-05-06 molecular biology 10.64898/2026.05.01.722373 medRxiv
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Chia (Salvia hispanica L.) is an emerging crop in Bangladesh valued for its medicinal properties and economic significance. In March 2024, target spot-like symptoms were observed in an experimental chia field (24.75{degrees} N, 90.50{degrees} E) at Bangladesh Agricultural University in Mymensingh, Bangladesh with disease incidence ranging from 23% to 47% across approximately 0.25 ha. Initially appearing as brick-red spots, these symptoms developed into target-shaped concentric rings, affecting leaves, stems, and inflorescences. A total of 24 fungal isolates were recovered from infected tissue; two representative isolates (BGECh-3 and BGECh-4) were randomly selected for details characterization. Pathogen identity was established through morphological traits, multilocus phylogenetic analysis of internal transcribed spacer (ITS) and elongation factor 1-alpha (EF-1) genes sequence, and pathogenicity confirmation through Kochs postulates, collectively identifying the causal agent as Corynespora cassiicola. The isolates demonstrated a broad host range, successfully infecting brinjal, chili, bottle gourd, country bean, tomato, and soybean. In vitro fungicide sensitivity assays with seven commercial fungicides showed that both isolates were highly sensitive to Goldzim (50% carbendazim), which completely inhibited mycelial growth at 10 {micro}g mL-{superscript 1}. Conza (10% Hexaconazole) and Amister top (18.2% azoxystrobin + 11.4% difenoconazole) reduced growth by up to 85% and 67%, respectively at equal concentration. Other fungicides showed comparatively lower efficacy even at higher concentrations. This study represents the first report of target spot disease of chia caused by C. cassiicola in Bangladesh and provides insights for effective disease management strategies.

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A weighted multi-trait approach for heterotic grouping of maize inbred lines under Striga infestation and optimum environments

Abubakar, A. M.; Adejumobi, I. I.; Mengesha, W. A.; Meseka, S.; Oyekunle, M.; Ado, S. G.; Bonkoungou, T. O.; Badu-Apraku, B. A.; Derera, J.

2026-05-16 genetics 10.64898/2026.05.15.725596 medRxiv
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Maximum utilization of existing genetic variability in a breeding program depends on the efficient classification of the inbred lines into heterotic groups, particularly under stress conditions. This study applied practical breeding approaches to determine the mode of genetic inheritance for Striga resistance and proposes a weighted heterotic grouping method based on the general combining ability of multiple traits (WHGCAMT) and compares its effectiveness with other existing methods in classifying the inbred lines into heterotic groups in Striga-infested and optimum environments. Using Diallel design IV, 300 crosses were generated from 21 inbred lines and 4 standard testers. The crosses, along with six checks, were evaluated in an 18 x 17 alpha lattice design with two replications at two locations, in both artificial Striga-infested and Striga-free environments. The inbred lines were genotyped using DArTtag SNP markers. Phenotypic and genotypic data were analyzed using R. Analysis of variance revealed significant mean squares for hybrid, general combining ability (GCA), specific combining ability (SCA) and their interactions with environment. Significant positive and negative GCA and SCA effects were detected for grain yield and other measured traits. However, a larger proportion of additive gene action than non-additive gene action was observed for grain yield and most measured traits. The analysis of molecular variance also showed substantial genetic differences within and between clusters. Except for HSCA, the mean grain yield between the inter-group and intra-group hybrids was significant for each method. Pairwise comparison of the inter- and intra-group hybrids of all the methods showed significant differences between the WHGCAMT and all other methods in most cases. WHGCAMT consistently produced higher-yielding inter-group hybrids and lower-yielding intra-group hybrids, achieving breeding efficiency improvements of 55.8%, 4.3%, 15.7%, and 11.4% over the HSCA, HSGCA, HGCAMT and molecular marker methods, respectively, under Striga infestation. Thus, WHGCAMT offers more precise, reliable and biologically meaningful heterotic groups among early-maturing maize inbred lines.